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nGauge 1.0.0 documentation
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C
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D
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E
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F
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G
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I
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L
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M
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N
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P
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R
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S
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T
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Y
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Z
A
abs_dot() (in module ngauge.util)
abs_dot_3d() (in module ngauge.util)
add_branch() (ngauge.Neuron.Neuron method)
add_child() (ngauge.TracingPoint.TracingPoint method)
add_soma_points() (ngauge.Neuron.Neuron method)
all_branch_angles() (ngauge.Neuron.Neuron method)
all_branch_orders() (ngauge.Neuron.Neuron method)
all_branch_points() (ngauge.Neuron.Neuron method)
all_neurites_tortuosities() (ngauge.Neuron.Neuron method)
all_path_angles() (ngauge.Neuron.Neuron method)
all_segment_lengths() (ngauge.Neuron.Neuron method)
angle() (ngauge.TracingPoint.TracingPoint method)
arbor_dist() (ngauge.Neuron.Neuron method)
average_thickness() (ngauge.Neuron.Neuron method)
avg_branch_angle() (ngauge.Neuron.Neuron method)
B
branch_angles_histogram() (ngauge.Neuron.Neuron method)
branch_angles_x_branch_orders() (ngauge.Neuron.Neuron method)
branch_angles_x_path_distances() (ngauge.Neuron.Neuron method)
branch_order_counts() (ngauge.Neuron.Neuron method)
branch_order_histogram() (ngauge.Neuron.Neuron method)
branches (ngauge.Neuron.Neuron attribute)
branching_order() (ngauge.TracingPoint.TracingPoint method)
C
center_soma() (ngauge.Neuron.Neuron method)
children (ngauge.TracingPoint.TracingPoint attribute)
D
dot() (in module ngauge.util)
E
euclidean_dist() (ngauge.TracingPoint.TracingPoint method)
euclidean_distances_to_soma_histogram() (ngauge.Neuron.Neuron method)
euclidean_to_ends() (ngauge.TracingPoint.TracingPoint method)
F
f_function_map() (in module ngauge.util)
farthest_tip() (ngauge.TracingPoint.TracingPoint method)
file_id (ngauge.TracingPoint.TracingPoint attribute)
from_swc() (ngauge.Neuron.Neuron static method)
from_swc_text() (ngauge.Neuron.Neuron static method)
G
get_all_nodes() (ngauge.TracingPoint.TracingPoint method)
get_all_segments() (ngauge.TracingPoint.TracingPoint method)
get_bifurcation_nodes() (ngauge.TracingPoint.TracingPoint method)
get_main_branch() (ngauge.Neuron.Neuron method)
get_path_to_root() (ngauge.TracingPoint.TracingPoint method)
get_tip_nodes() (ngauge.TracingPoint.TracingPoint method)
I
is_bif() (ngauge.TracingPoint.TracingPoint method)
is_root() (ngauge.TracingPoint.TracingPoint method)
is_tip() (ngauge.TracingPoint.TracingPoint method)
iter_all_points() (ngauge.Neuron.Neuron method)
L
load_default_smat() (in module ngauge.util)
M
max_branch_angle() (ngauge.Neuron.Neuron method)
max_branching_order() (ngauge.Neuron.Neuron method)
max_partition_asymmetry() (ngauge.Neuron.Neuron method)
max_path_angle() (ngauge.Neuron.Neuron method)
max_tortuosity() (ngauge.Neuron.Neuron method)
median_path_angle() (ngauge.Neuron.Neuron method)
median_tortuosity() (ngauge.Neuron.Neuron method)
metadata (ngauge.Neuron.Neuron attribute)
min_branch_angle() (ngauge.Neuron.Neuron method)
min_partition_asymmetry() (ngauge.Neuron.Neuron method)
module
ngauge.Neuron
ngauge.TracingPoint
ngauge.util
N
neurite_tortuosity() (ngauge.TracingPoint.TracingPoint method)
Neuron (class in ngauge.Neuron)
next_bif_point() (ngauge.TracingPoint.TracingPoint method)
ngauge.Neuron
module
ngauge.TracingPoint
module
ngauge.util
module
P
parent (ngauge.TracingPoint.TracingPoint attribute)
partition_asymmetry() (ngauge.TracingPoint.TracingPoint method)
path_angle_x_branch_order() (ngauge.Neuron.Neuron method)
path_angle_x_path_distance() (ngauge.Neuron.Neuron method)
path_angles_histogram() (ngauge.Neuron.Neuron method)
path_dist_to_child() (ngauge.TracingPoint.TracingPoint method)
path_dist_to_ends() (ngauge.TracingPoint.TracingPoint method)
path_dist_to_root() (ngauge.TracingPoint.TracingPoint method)
path_distances_to_soma_histogram() (ngauge.Neuron.Neuron method)
persistence_diagram() (ngauge.Neuron.Neuron method)
plot() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
R
r (ngauge.TracingPoint.TracingPoint attribute)
rotate() (ngauge.Neuron.Neuron method)
rotation_matrix() (in module ngauge.util)
S
scale() (ngauge.Neuron.Neuron method)
segment_length_histogram() (ngauge.Neuron.Neuron method)
select_nodes() (ngauge.TracingPoint.TracingPoint method)
slice_perimeter() (ngauge.TracingPoint.TracingPoint static method)
slice_perimeters() (ngauge.Neuron.Neuron method)
slice_surface_area() (ngauge.TracingPoint.TracingPoint static method)
slice_surface_areas() (ngauge.Neuron.Neuron method)
soma_centroid() (ngauge.Neuron.Neuron method)
soma_layers (ngauge.Neuron.Neuron attribute)
soma_surface_area() (ngauge.Neuron.Neuron method)
soma_volume() (ngauge.Neuron.Neuron method)
T
t (ngauge.TracingPoint.TracingPoint attribute)
tangent_from_points() (in module ngauge.util)
thickness_histogram() (ngauge.Neuron.Neuron method)
thickness_x_branch_order() (ngauge.Neuron.Neuron method)
thickness_x_path_distance() (ngauge.Neuron.Neuron method)
total_bif_nodes() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
total_branch_nodes() (ngauge.Neuron.Neuron method)
total_child_nodes() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
total_children() (ngauge.TracingPoint.TracingPoint method)
total_depth() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
total_dim() (ngauge.Neuron.Neuron method)
total_height() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
total_root_branches() (ngauge.Neuron.Neuron method)
total_tip_nodes() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
total_volume() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
total_width() (ngauge.Neuron.Neuron method)
(ngauge.TracingPoint.TracingPoint method)
TracingPoint (class in ngauge.TracingPoint)
translate() (ngauge.Neuron.Neuron method)
X
x (ngauge.TracingPoint.TracingPoint attribute)
Y
y (ngauge.TracingPoint.TracingPoint attribute)
Z
z (ngauge.TracingPoint.TracingPoint attribute)
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